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Jan 04 2019  I want to combine the p values of these 841 genes into a single p value The idea is that this single p value after combining all the p values of the genes will represent the significance of the tissue in the particular phenotype I have tried using the fisher.method command as below S num.p p.value p.adj 1 3.332016528 1 0.18900 0.9830678 2

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Choosing an optimal method to combine P values

Fisher 1925 was the first to suggest a method of combining the p values obtained from several statistics and many other methods have been proposed since then method Motivated by a situation that now often arises in genetic epidemiology we co Choosing an optimal method to combine P values Stat Med 2009 May 1528 11 1537 53 doi

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scipy.statsbine pvalues

Array of p values assumed to come from independent tests method 'fisher' 'pearson' 'tippett' 'stouffer' 'mudholkar george' optional Name of method to use to combine p values The following methods are available default is 'fisher' 'fisher' Fisher's method Fisher's combined probability test the sum

fishers exact test

A and C can construct a contingency table and I can get a p value pValue1 with Fisher s exact test B and C can construct another contingency table and I can get I want to know how to combine these two p values and get a single one One possible method is using Fisher s method but it tends to generate a new value close to the minimum

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pandas combine two strings ignore nan values

Show activity on this post I have two columns with strings I would like to combine them and ignore nan values Such that ColA Colb ColA ColB str str strstr str nan str nan str str I tried df ColA ColB = df ColA df ColB but that creates a nan value if either column is nan I ve also thought about using concat.

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